USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

USC-OGP 2-DE database  Search by                Maps             Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal World-2DPAGE Repository Exclude local DBs has only effect if a remote interface is selected

Searching in 'USC-OGP 2-DE database' for entry matching: P41219 USC-OGP 2-DE database:  P41219 P41219 General information about the entry View entry in simple text format Entry name PERI_HUMAN Primary accession number P41219 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=Peripherin; AltName: Full=Neurofilament 4;. Gene name Name=PRPH Synonyms=NEF4, PRPH1 Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1161: pI=5.44; Mw=49904 SPOT OGP-1171: pI=4.97; Mw=46576 Cross-references UniProtKB/Swiss-Prot P41219; PERI_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name PERI_HUMAN Primary accession number P41219 Secondary accession number(s) Q8N577 Sequence was last modified on  October 31, 2006 (version 2) Annotations were last modified on  March 15, 2017 (version 151) Name and origin of the protein Description RecName: Full=Peripherin; AltName: Full=Neurofilament 4; Gene name Name=PRPH Synonyms=NEF4, PRPH1 Encoded on Name=PRPH; Synonyms=NEF4, PRPH1 Keywords Acetylation; Alternative splicing; Coiled coil; Complete proteome; Intermediate filament; Isopeptide bond; Nitration; Phosphoprotein; Reference proteome; Ubl conjugation. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL L14565; AAA60190.1; -; Genomic_DNA EMBL AC125611; -; NOT_ANNOTATED_CDS; Genomic_DNA EMBL BC032703; AAH32703.1; -; mRNA CCDS CCDS8783.1; -. [P41219-1]; . PIR A55185; A55185; . RefSeq NP_006253.2; NM_006262.3. [P41219-1]; . RefSeq XP_005269082.1; XM_005269025.1. [P41219-2]; . UniGene Hs.37044; -; . ProteinModelPortal P41219; -; . SMR P41219; -; . BioGrid 111614; 17; . IntAct P41219; 39; . MINT MINT-1482695; -; . STRING 9606.ENSP00000257860; -; . iPTMnet P41219; -; . PhosphoSitePlus P41219; -; . SwissPalm P41219; -; . BioMuta PRPH; -; . DMDM 118585871; -; . EPD P41219; -; . MaxQB P41219; -; . PaxDb P41219; -; . PeptideAtlas P41219; -; . PRIDE P41219; -; . DNASU 5630; -; . Ensembl ENST00000257860; ENSP00000257860; ENSG00000135406. [P41219-1]; . GeneID 5630; -; . KEGG hsa:5630; -; . UCSC uc001rtu.4; human. [P41219-1]; . CTD 5630; -; . DisGeNET 5630; -; . GeneCards PRPH; -; . H-InvDB HIX0026468; -; . HGNC HGNC:9461; PRPH; . HPA CAB002437; -; . HPA HPA039277; -; . HPA HPA063887; -; . MalaCards PRPH; -; . MIM 170710; gene; . neXtProt NX_P41219; -; . OpenTargets ENSG00000135406; -; . Orphanet 803; Amyotrophic lateral sclerosis; . PharmGKB PA33816; -; . eggNOG ENOG410IE39; Eukaryota; . eggNOG ENOG410YCMG; LUCA; . GeneTree ENSGT00830000128228; -; . HOGENOM HOG000230977; -; . HOVERGEN HBG013015; -; . InParanoid P41219; -; . KO K07607; -; . OMA ESHKEQR; -; . OrthoDB EOG091G12MK; -; . PhylomeDB P41219; -; . TreeFam TF330122; -; . GeneWiki Peripherin; -; . GenomeRNAi 5630; -; . PRO PR:P41219; -; . Proteomes UP000005640; Chromosome 12; . Bgee ENSG00000135406; -; . CleanEx HS_PRPH; -; . ExpressionAtlas P41219; baseline and differential; . Genevisible P41219; HS; . GO GO:0070062; C:extracellular exosome; IDA:UniProtKB; . GO GO:0005882; C:intermediate filament; TAS:ProtInc; . GO GO:0016020; C:membrane; IDA:UniProtKB; . GO GO:0045098; C:type III intermediate filament; IEA:InterPro; . GO GO:0005198; F:structural molecule activity; NAS:ProtInc; . InterPro IPR001664; IF; . InterPro IPR006821; Intermed_filament_DNA-bd; . InterPro IPR018039; Intermediate_filament_CS; . InterPro IPR002957; Keratin_I; . InterPro IPR027700; PRPH/Plasticin; . PANTHER PTHR23239; PTHR23239; 1; . PANTHER PTHR23239:SF288; PTHR23239:SF288; 1; . Pfam PF00038; Filament; 1; . Pfam PF04732; Filament_head; 1; . PRINTS PR01248; TYPE1KERATIN; . SMART SM01391; Filament; 1; . PROSITE PS00226; IF; 1; .

Gateways to other related servers

• The World-2DPAGE Constellation - Entry point to the world-wide 2-DPAGE resources.
• World-2DPAGE Repository - A public repository for gel-based proteomics data linked to protein identification published in the literature.
• World-2DPAGE Portal - A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
• SWISS-2DPAGE - The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
• ExPASy - The resources web server of the Swiss Institute of Bioinformatics

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